cns_refine {<cns-statement>} stop

<cns-statement> :==

  aria <aria-statement> end --{ARIA NOE assignment}
  connectivity <connectivity-statement> end --{Analyse atomic connectivity}
  coordinate <coordinate-statement> end --{Read and manipulate coordinates}
  delete <delete-statement> end --{Delete atoms}
  distance <distance-statement> end --{Analyse nonbonded distances}
  do <do-statement> --{Manipulate atom objects}
  duplicate <duplicate-statement> end --{Duplicate atoms}
  dynamics <dynamics-statement> end --{Molecular dynamics}
  energy <energy-statement> end --{Calculate current energy}
  fastnb <fastnb-statement> end --{Fast nonbonded interaction setup}
  fix <fix-statement> end --{Fix atomic positions}
  flags <flags-statement> end --{Flag energy terms}
  identity <identity-statement> --{Store atom selections}
  igroup <igroup-statement> end --{Setup interacting sets of atoms}
  minimize <minimize-statement> end --{Energy minimization}
  mmdg <mmdg-statement> end --{Distance geometry calculation}
  modes <modes-statement> end --{Quasi-normal mode analysis.}
  ncs <ncs-statement> end --{Non-crystallographic symmetry}
  noe <noe-statement> end --{NMR distance restraints}
  parameter <parameter-statement> end --{Read atomic parameters}
  patch <patch-statement> end --{Patch molecular topology database}
  pick <pick-statement> --{Analyse geometric properties}
  print <print-statement> --{Print molecular properties}
  read <read-statement> end --{Read information from file}
  restraints <restraints-statement> end --{Additional atomic restraints}
  rotman <rotman-statement> end --{Compare matrices}
  segment <segment-statement> end --{Define molecular topology}
  show <show-statement> --{Show atomic objects}
  structure <structure-statement> end --{Read molecular topology}
  surface <surface-statement> end --{Surface area calculation}
  test <test-statement> end --{Test first derivative and memory}
  topology <topology-statement> end --{Residue and patch topology database}
  write <write-statement> end --{Write information}
  xray <xray-statement> end --{Xray restraint and manipulation}
  ? --{Print information about current status}
  <global-statement> --{Global commands - See help-global}
